Manuscript Tracker is a free software application designed to help you track your queries and submissions. A cursory check into its features shows it gets the job done. You can list your titles, word counts, and "genre" (which is really/also your format list). In the notes you can supply dates submitted and whatnot.
I would love to see production suites such as Celtx add a feature like this (Celtx is now upgradeable to 2.7), or Manuscript Tracker to add a feature where you can upload the actual manuscript in question. But there are ways around that.